IL_8VKV_080

3D structure

PDB id

8VKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex (TTC-B) containing mRNA with a 33 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VKV_080 not in the Motif Atlas

Geometric match to IL_9DFE_019

Geometric discrepancy: 0.0926

The information below is about IL_9DFE_019

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_15190.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

24

Unit IDs

8VKV|1|a|U|703
8VKV|1|a|G|704
8VKV|1|a|A|705
8VKV|1|a|A|706
8VKV|1|a|G|707
*
8VKV|1|a|U|724
8VKV|1|a|G|725
8VKV|1|a|G|726
8VKV|1|a|A|727
8VKV|1|a|G|728

Current chains

Chain a

23S rRNA

Nearby chains

Chain h

50S ribosomal protein L2