IL_8VKV_101

3D structure

PDB id

8VKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex (TTC-B) containing mRNA with a 33 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCCAGACAGC*GUCGAG

Length

16 nucleotides

Bulged bases

8VKV|1|a|A|1046

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VKV|1|a|C|1043
8VKV|1|a|C|1044
8VKV|1|a|C|1045
8VKV|1|a|A|1046
8VKV|1|a|G|1047
8VKV|1|a|A|1048
8VKV|1|a|C|1049
8VKV|1|a|A|1050
8VKV|1|a|G|1051
8VKV|1|a|C|1052
*
8VKV|1|a|G|1107
8VKV|1|a|U|1108
8VKV|1|a|C|1109
8VKV|1|a|G|1110
8VKV|1|a|A|1111
8VKV|1|a|G|1112

Current chains

Chain a

23S rRNA

Nearby chains

Chain 9

50S ribosomal protein L10

Chain p

50S ribosomal protein L6

Chain q

50S ribosomal protein L36