IL_8VKV_141

3D structure

PDB id

8VKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex (TTC-B) containing mRNA with a 33 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

ACG*CUAU

Length

7 nucleotides

Bulged bases

8VKV|1|a|C|2055, 8VKV|1|a|U|2613, 8VKV|1|a|A|2614

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VKV_141 not in the Motif Atlas

Geometric match to IL_5J7L_321

Geometric discrepancy: 0.1072

The information below is about IL_5J7L_321

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_83389.2

Basepair signature

cWW-cWW

Number of instances in this motif group

5

Unit IDs

8VKV|1|a|A|2054
8VKV|1|a|C|2055
8VKV|1|a|G|2056
*
8VKV|1|a|C|2612
8VKV|1|a|U|2613
8VKV|1|a|A|2614
8VKV|1|a|U|2615

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L22

Chain i

50S ribosomal protein L32

Chain j

50S ribosomal protein L3