IL_8VKV_147

3D structure

PDB id

8VKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex (TTC-B) containing mRNA with a 33 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUGUAGGAUAGG*CCC

Length

15 nucleotides

Bulged bases

8VKV|1|a|U|2111, 8VKV|1|a|A|2114, 8VKV|1|a|G|2115, 8VKV|1|a|U|2118, 8VKV|1|a|A|2119

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VKV|1|a|G|2110
8VKV|1|a|U|2111
8VKV|1|a|G|2112
8VKV|1|a|U|2113
8VKV|1|a|A|2114
8VKV|1|a|G|2115
8VKV|1|a|G|2116
8VKV|1|a|A|2117
8VKV|1|a|U|2118
8VKV|1|a|A|2119
8VKV|1|a|G|2120
8VKV|1|a|G|2121
*
8VKV|1|a|C|2177
8VKV|1|a|C|2178
8VKV|1|a|C|2179

Current chains

Chain a

23S rRNA

Nearby chains

Chain A

Transfer RNA; tRNA