IL_8VKV_148

3D structure

PDB id

8VKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex (TTC-B) containing mRNA with a 33 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGGAG*CGACCUUGAAAUACC

Length

20 nucleotides

Bulged bases

8VKV|1|a|U|2172

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VKV|1|a|G|2123
8VKV|1|a|G|2124
8VKV|1|a|G|2125
8VKV|1|a|A|2126
8VKV|1|a|G|2127
*
8VKV|1|a|C|2161
8VKV|1|a|G|2162
8VKV|1|a|A|2163
8VKV|1|a|C|2164
8VKV|1|a|C|2165
8VKV|1|a|U|2166
8VKV|1|a|U|2167
8VKV|1|a|G|2168
8VKV|1|a|A|2169
8VKV|1|a|A|2170
8VKV|1|a|A|2171
8VKV|1|a|U|2172
8VKV|1|a|A|2173
8VKV|1|a|C|2174
8VKV|1|a|C|2175

Current chains

Chain a

23S rRNA

Nearby chains

Chain A

Transfer RNA; tRNA