IL_8VKW_004
3D structure
- PDB id
- 8VKW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to delNTE-HflX
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.44 Å
Loop
- Sequence
- GGGGAG*CGUUGAUCC
- Length
- 15 nucleotides
- Bulged bases
- 8VKW|1|A|U|98
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VKW_004 not in the Motif Atlas
- Geometric match to IL_4LFB_031
- Geometric discrepancy: 0.2851
- The information below is about IL_4LFB_031
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_95727.1
- Basepair signature
- cWW-L-tSH-L-tHW-tHS-R-cWW-L
- Number of instances in this motif group
- 1
Unit IDs
8VKW|1|A|G|77
8VKW|1|A|G|78
8VKW|1|A|G|79
8VKW|1|A|G|80
8VKW|1|A|A|81
8VKW|1|A|G|82
*
8VKW|1|A|C|95
8VKW|1|A|G|96
8VKW|1|A|U|97
8VKW|1|A|U|98
8VKW|1|A|G|99
8VKW|1|A|A|100
8VKW|1|A|U|101
8VKW|1|A|C|102
8VKW|1|A|C|103
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain V
- 50S ribosomal protein L24
- Chain Z
- 50S ribosomal protein L29
Coloring options: