IL_8VKW_013

3D structure

PDB id

8VKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to delNTE-HflX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.44 Å

Loop

Sequence

UAG*UGAAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VKW_013 not in the Motif Atlas

Homologous match to IL_9DFE_011

Geometric discrepancy: 0.1843

The information below is about IL_9DFE_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76658.1

Basepair signature

cWW-L-R-cSH-cWW

Number of instances in this motif group

4

Unit IDs

8VKW|1|A|U|374
8VKW|1|A|A|375
8VKW|1|A|G|376
*
8VKW|1|A|U|425
8VKW|1|A|G|426
8VKW|1|A|A|427
8VKW|1|A|A|428
8VKW|1|A|A|429

Current chains

Chain A

23S ribosomal RNA

Nearby chains