IL_8VKW_035

3D structure

PDB id

8VKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to delNTE-HflX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.44 Å

Loop

Sequence

CCGAUG*CUGACG

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VKW_035 not in the Motif Atlas

Geometric match to IL_5LR4_002

Geometric discrepancy: 0.3457

The information below is about IL_5LR4_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_29495.1

Basepair signature

cWW-tSH-tSH-tHS-tHS-cWW

Number of instances in this motif group

6

Unit IDs

8VKW|1|A|C|991
8VKW|1|A|C|992
8VKW|1|A|G|993
8VKW|1|A|A|994
8VKW|1|A|U|995
8VKW|1|A|G|996
*
8VKW|1|A|C|1012
8VKW|1|A|U|1013
8VKW|1|A|G|1014
8VKW|1|A|A|1015
8VKW|1|A|C|1016
8VKW|1|A|G|1017

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain W

50S ribosomal protein L25