IL_8VKW_066

3D structure

PDB id

8VKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to delNTE-HflX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.44 Å

Loop

Sequence

GGAA*UAUGC

Length

9 nucleotides

Bulged bases

8VKW|1|A|U|1779

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VKW_066 not in the Motif Atlas

Homologous match to IL_5J7L_296

Geometric discrepancy: 0.2649

The information below is about IL_5J7L_296

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_58112.2

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

8VKW|1|A|G|1653
8VKW|1|A|G|1654
8VKW|1|A|A|1655
8VKW|1|A|A|1656
*
8VKW|1|A|U|1777
8VKW|1|A|A|1778
8VKW|1|A|U|1779
8VKW|1|A|G|1780
8VKW|1|A|C|1781

Current chains

Chain A

23S ribosomal RNA

Nearby chains