IL_8VKW_085

3D structure

PDB id

8VKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to delNTE-HflX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.44 Å

Loop

Sequence

UUAAGAGGACC*GAGAAUUUAAG

Length

22 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VKW_085 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.5776

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8VKW|1|A|U|2068
8VKW|1|A|U|2069
8VKW|1|A|A|2070
8VKW|1|A|A|2071
8VKW|1|A|G|2072
8VKW|1|A|A|2073
8VKW|1|A|G|2074
8VKW|1|A|G|2075
8VKW|1|A|A|2076
8VKW|1|A|C|2077
8VKW|1|A|C|2078
*
8VKW|1|A|G|2105
8VKW|1|A|A|2106
8VKW|1|A|G|2107
8VKW|1|A|A|2108
8VKW|1|A|A|2109
8VKW|1|A|U|2110
8VKW|1|A|U|2111
8VKW|1|A|U|2112
8VKW|1|A|A|2113
8VKW|1|A|A|2114
8VKW|1|A|G|2115

Current chains

Chain A

23S ribosomal RNA

Nearby chains