IL_8VKW_105

3D structure

PDB id

8VKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to delNTE-HflX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.44 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VKW_105 not in the Motif Atlas

Homologous match to IL_7A0S_087

Geometric discrepancy: 0.2784

The information below is about IL_7A0S_087

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.3

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

8VKW|1|A|C|2690
8VKW|1|A|C|2691
8VKW|1|A|A|2692
8VKW|1|A|A|2693
8VKW|1|A|G|2694
*
8VKW|1|A|C|2704
8VKW|1|A|G|2705
8VKW|1|A|A|2706
8VKW|1|A|C|2707
8VKW|1|A|G|2708

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

GTPase HflX

Chain N

Large ribosomal subunit protein uL16

Chain f

50S ribosomal protein L36