IL_8VKW_112

3D structure

PDB id

8VKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to delNTE-HflX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.44 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VKW_112 not in the Motif Atlas

Homologous match to IL_5J7L_346

Geometric discrepancy: 0.1552

The information below is about IL_5J7L_346

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

8VKW|1|A|C|2876
8VKW|1|A|U|2877
8VKW|1|A|A|2878
8VKW|1|A|G|2879
8VKW|1|A|U|2880
8VKW|1|A|A|2881
8VKW|1|A|C|2882
*
8VKW|1|A|G|2887
8VKW|1|A|G|2888
8VKW|1|A|A|2889
8VKW|1|A|C|2890
8VKW|1|A|C|2891
8VKW|1|A|G|2892

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L6