IL_8VL1_012

3D structure

PDB id

8VL1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 36 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

8VL1|1|D|U|173

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VL1_012 not in the Motif Atlas

Geometric match to IL_5J7L_012

Geometric discrepancy: 0.1297

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

8VL1|1|D|G|147
8VL1|1|D|G|148
8VL1|1|D|A|149
8VL1|1|D|U|150
8VL1|1|D|A|151
8VL1|1|D|A|152
8VL1|1|D|C|153
*
8VL1|1|D|G|168
8VL1|1|D|C|169
8VL1|1|D|U|170
8VL1|1|D|A|171
8VL1|1|D|A|172
8VL1|1|D|U|173
8VL1|1|D|A|174
8VL1|1|D|C|175

Current chains

Chain D

16S rRNA

Nearby chains

Chain E

30S ribosomal protein S20