IL_8VL1_013

3D structure

PDB id

8VL1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 36 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

GAUUAG*CGACGAUC

Length

14 nucleotides

Bulged bases

8VL1|1|D|U|244, 8VL1|1|D|C|280

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VL1_013 not in the Motif Atlas

Geometric match to IL_5J7L_014

Geometric discrepancy: 0.082

The information below is about IL_5J7L_014

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

8VL1|1|D|G|242
8VL1|1|D|A|243
8VL1|1|D|U|244
8VL1|1|D|U|245
8VL1|1|D|A|246
8VL1|1|D|G|247
*
8VL1|1|D|C|277
8VL1|1|D|G|278
8VL1|1|D|A|279
8VL1|1|D|C|280
8VL1|1|D|G|281
8VL1|1|D|A|282
8VL1|1|D|U|283
8VL1|1|D|C|284

Current chains

Chain D

16S rRNA

Nearby chains

Chain R

30S ribosomal protein S12

Chain V

30S ribosomal protein S17