IL_8VL1_031

3D structure

PDB id

8VL1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 36 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

UAGAG*UGGA

Length

9 nucleotides

Bulged bases

8VL1|1|D|A|665

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VL1_031 not in the Motif Atlas

Geometric match to IL_5J7L_033

Geometric discrepancy: 0.0726

The information below is about IL_5J7L_033

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

8VL1|1|D|U|662
8VL1|1|D|A|663
8VL1|1|D|G|664
8VL1|1|D|A|665
8VL1|1|D|G|666
*
8VL1|1|D|U|740
8VL1|1|D|G|741
8VL1|1|D|G|742
8VL1|1|D|A|743

Current chains

Chain D

16S rRNA

Nearby chains

Chain C

30S ribosomal protein S18

Chain L

30S ribosomal protein S6

Chain T

Small ribosomal subunit protein uS15