IL_8VL1_036

3D structure

PDB id

8VL1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 36 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

GGAGUACG*UAAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VL1_036 not in the Motif Atlas

Geometric match to IL_5J7L_038

Geometric discrepancy: 0.0736

The information below is about IL_5J7L_038

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

8VL1|1|D|G|887
8VL1|1|D|G|888
8VL1|1|D|A|889
8VL1|1|D|G|890
8VL1|1|D|U|891
8VL1|1|D|A|892
8VL1|1|D|C|893
8VL1|1|D|G|894
*
8VL1|1|D|U|905
8VL1|1|D|A|906
8VL1|1|D|A|907
8VL1|1|D|A|908
8VL1|1|D|A|909
8VL1|1|D|C|910

Current chains

Chain D

16S rRNA

Nearby chains

Chain R

30S ribosomal protein S12