IL_8VL1_068

3D structure

PDB id

8VL1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 36 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VL1_068 not in the Motif Atlas

Geometric match to IL_5J7L_251

Geometric discrepancy: 0.0696

The information below is about IL_5J7L_251

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

8VL1|1|a|C|239
8VL1|1|a|C|240
8VL1|1|a|A|241
8VL1|1|a|G|242
8VL1|1|a|U|243
8VL1|1|a|A|244
8VL1|1|a|G|245
*
8VL1|1|a|C|253
8VL1|1|a|G|254
8VL1|1|a|A|255
8VL1|1|a|A|256
8VL1|1|a|C|257
8VL1|1|a|G|258

Current chains

Chain a

23S rRNA

Nearby chains

Chain o

50S ribosomal protein L35

Chain u

50S ribosomal protein L15