IL_8VL1_109

3D structure

PDB id

8VL1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 36 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

CCAAC*GGG

Length

8 nucleotides

Bulged bases

8VL1|1|a|G|1332

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VL1_109 not in the Motif Atlas

Geometric match to IL_5J7L_291

Geometric discrepancy: 0.1194

The information below is about IL_5J7L_291

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.11

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

19

Unit IDs

8VL1|1|a|C|1319
8VL1|1|a|C|1320
8VL1|1|a|A|1321
8VL1|1|a|A|1322
8VL1|1|a|C|1323
*
8VL1|1|a|G|1331
8VL1|1|a|G|1332
8VL1|1|a|G|1333

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L22

Chain 2

50S ribosomal protein L23