IL_8VL1_172
3D structure
- PDB id
- 8VL1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 36 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.3 Å
Loop
- Sequence
- ACCCC*GAACU
- Length
- 10 nucleotides
- Bulged bases
- 8VL1|1|d|C|35, 8VL1|1|d|C|36
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VL1_172 not in the Motif Atlas
- Geometric match to IL_5J7L_358
- Geometric discrepancy: 0.1429
- The information below is about IL_5J7L_358
- Detailed Annotation
- Symmetric double minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_58103.11
- Basepair signature
- cWW-cSH-cWS-L-tSW-R-R-cWW
- Number of instances in this motif group
- 9
Unit IDs
8VL1|1|d|A|34
8VL1|1|d|C|35
8VL1|1|d|C|36
8VL1|1|d|C|37
8VL1|1|d|C|38
*
8VL1|1|d|G|44
8VL1|1|d|A|45
8VL1|1|d|A|46
8VL1|1|d|C|47
8VL1|1|d|U|48
Current chains
- Chain d
- 5S rRNA
Nearby chains
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
- Chain g
- 50S ribosomal protein L31
- Chain n
- 50S ribosomal protein L5
- Chain x
- 50S ribosomal protein L18
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