IL_8VMA_007

3D structure

PDB id

8VMA (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of rhinovirus C15 RNA replication element sD-loop mutant in complex with Fab BL3-6

Experimental method

X-RAY DIFFRACTION

Resolution

2.54 Å

Loop

Sequence

CC*GUG

Length

5 nucleotides

Bulged bases

8VMA|1|R|U|41

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VMA_007 not in the Motif Atlas

Geometric match to IL_5J7L_298

Geometric discrepancy: 0.321

The information below is about IL_5J7L_298

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

8VMA|1|R|C|36
8VMA|1|R|C|37
*
8VMA|1|R|G|40
8VMA|1|R|U|41
8VMA|1|R|G|42

Current chains

Chain R

RNA (88-MER)

Nearby chains

Chain B

Light Chain of Fab BL3-6