IL_8VOO_100

3D structure

PDB id

8VOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 39 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAAG*CGGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VOO_100 not in the Motif Atlas

Geometric match to IL_5J7L_283

Geometric discrepancy: 0.142

The information below is about IL_5J7L_283

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

8VOO|1|a|G|1038
8VOO|1|a|A|1039
8VOO|1|a|A|1040
8VOO|1|a|G|1041
*
8VOO|1|a|C|1114
8VOO|1|a|G|1115
8VOO|1|a|G|1116
8VOO|1|a|C|1117

Current chains

Chain a

23S rRNA

Nearby chains

Chain 4

50S ribosomal protein L25

Chain p

50S ribosomal protein L6

Chain v

50S ribosomal protein L16