IL_8VOO_117

3D structure

PDB id

8VOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 39 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUAU*AAAUG

Length

9 nucleotides

Bulged bases

8VOO|1|a|U|1554

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VOO_117 not in the Motif Atlas

Geometric match to IL_5J7L_297

Geometric discrepancy: 0.0729

The information below is about IL_5J7L_297

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_99646.2

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

8VOO|1|a|C|1437
8VOO|1|a|U|1438
8VOO|1|a|A|1439
8VOO|1|a|U|1440
*
8VOO|1|a|A|1551
8VOO|1|a|A|1552
8VOO|1|a|A|1553
8VOO|1|a|U|1554
8VOO|1|a|G|1555

Current chains

Chain a

23S rRNA

Nearby chains