IL_8VOO_173

3D structure

PDB id

8VOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 39 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGAUGGUAG*CGAGAGUAG

Length

18 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VOO_173 not in the Motif Atlas

Geometric match to IL_5J7L_359

Geometric discrepancy: 0.064

The information below is about IL_5J7L_359

Detailed Annotation

Bacterial 5S Loop E

Broad Annotation

Loop E

Motif group

IL_56455.6

Basepair signature

cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

8VOO|1|d|C|71
8VOO|1|d|G|72
8VOO|1|d|A|73
8VOO|1|d|U|74
8VOO|1|d|G|75
8VOO|1|d|G|76
8VOO|1|d|U|77
8VOO|1|d|A|78
8VOO|1|d|G|79
*
8VOO|1|d|C|97
8VOO|1|d|G|98
8VOO|1|d|A|99
8VOO|1|d|G|100
8VOO|1|d|A|101
8VOO|1|d|G|102
8VOO|1|d|U|103
8VOO|1|d|A|104
8VOO|1|d|G|105

Current chains

Chain d

5S rRNA

Nearby chains

Chain 4

50S ribosomal protein L25

Chain a

Large subunit ribosomal RNA; LSU rRNA

Chain v

50S ribosomal protein L16