IL_8VOP_011

3D structure

PDB id

8VOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex (TTC-B) containing mRNA with a 36 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

GGGGGAUAAC*GCUAAUACCGC

Length

21 nucleotides

Bulged bases

8VOP|1|D|U|173

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VOP|1|D|G|144
8VOP|1|D|G|145
8VOP|1|D|G|146
8VOP|1|D|G|147
8VOP|1|D|G|148
8VOP|1|D|A|149
8VOP|1|D|U|150
8VOP|1|D|A|151
8VOP|1|D|A|152
8VOP|1|D|C|153
*
8VOP|1|D|G|168
8VOP|1|D|C|169
8VOP|1|D|U|170
8VOP|1|D|A|171
8VOP|1|D|A|172
8VOP|1|D|U|173
8VOP|1|D|A|174
8VOP|1|D|C|175
8VOP|1|D|C|176
8VOP|1|D|G|177
8VOP|1|D|C|178

Current chains

Chain D

16S rRNA

Nearby chains

Chain E

30S ribosomal protein S20