IL_8VOP_018

3D structure

PDB id

8VOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex (TTC-B) containing mRNA with a 36 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VOP|1|D|U|409
8VOP|1|D|G|410
8VOP|1|D|A|411
8VOP|1|D|A|412
8VOP|1|D|G|413
8VOP|1|D|A|414
8VOP|1|D|A|415
8VOP|1|D|G|416
*
8VOP|1|D|U|427
8VOP|1|D|G|428
8VOP|1|D|U|429
8VOP|1|D|A|430
8VOP|1|D|A|431
8VOP|1|D|A|432
8VOP|1|D|G|433

Current chains

Chain D

16S rRNA

Nearby chains

Chain J

30S ribosomal protein S4