IL_8VOP_025

3D structure

PDB id

8VOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex (TTC-B) containing mRNA with a 36 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

UAA*UG

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VOP_025 not in the Motif Atlas

Geometric match to IL_1I6U_001

Geometric discrepancy: 0.094

The information below is about IL_1I6U_001

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.7

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

40

Unit IDs

8VOP|1|D|U|594
8VOP|1|D|A|595
8VOP|1|D|A|596
*
8VOP|1|D|U|644
8VOP|1|D|G|645

Current chains

Chain D

16S rRNA

Nearby chains

Chain N

30S ribosomal protein S8

Chain V

30S ribosomal protein S17