IL_8VOP_041

3D structure

PDB id

8VOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex (TTC-B) containing mRNA with a 36 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

GAAG*UGUGCCUUCGGGAAC

Length

19 nucleotides

Bulged bases

8VOP|1|D|U|1030, 8VOP|1|D|C|1031, 8VOP|1|D|G|1032

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VOP|1|D|G|1003
8VOP|1|D|A|1004
8VOP|1|D|A|1005
8VOP|1|D|G|1006
*
8VOP|1|D|U|1023
8VOP|1|D|G|1024
8VOP|1|D|U|1025
8VOP|1|D|G|1026
8VOP|1|D|C|1027
8VOP|1|D|C|1028
8VOP|1|D|U|1029
8VOP|1|D|U|1030
8VOP|1|D|C|1031
8VOP|1|D|G|1032
8VOP|1|D|G|1033
8VOP|1|D|G|1034
8VOP|1|D|A|1035
8VOP|1|D|A|1036
8VOP|1|D|C|1037

Current chains

Chain D

16S rRNA

Nearby chains

Chain S

30S ribosomal protein S14