IL_8VOP_051

3D structure

PDB id

8VOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex (TTC-B) containing mRNA with a 36 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

GAAGCGACC*GCAAGCGGACC

Length

20 nucleotides

Bulged bases

8VOP|1|D|A|1257, 8VOP|1|D|A|1280, 8VOP|1|D|C|1281

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VOP|1|D|G|1255
8VOP|1|D|A|1256
8VOP|1|D|A|1257
8VOP|1|D|G|1258
8VOP|1|D|C|1259
8VOP|1|D|G|1260
8VOP|1|D|A|1261
8VOP|1|D|C|1262
8VOP|1|D|C|1263
*
8VOP|1|D|G|1272
8VOP|1|D|C|1273
8VOP|1|D|A|1274
8VOP|1|D|A|1275
8VOP|1|D|G|1276
8VOP|1|D|C|1277
8VOP|1|D|G|1278
8VOP|1|D|G|1279
8VOP|1|D|A|1280
8VOP|1|D|C|1281
8VOP|1|D|C|1282

Current chains

Chain D

16S rRNA

Nearby chains

Chain AB

Transcription termination/antitermination protein NusG

Chain I

30S ribosomal protein S3

Chain P

30S ribosomal protein S10

Chain S

30S ribosomal protein S14

Chain W

30S ribosomal protein S19