IL_8VOP_067

3D structure

PDB id

8VOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex (TTC-B) containing mRNA with a 36 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

8VOP|1|a|G|277

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VOP_067 not in the Motif Atlas

Geometric match to IL_5J7L_253

Geometric discrepancy: 0.1673

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

8VOP|1|a|C|274
8VOP|1|a|C|275
8VOP|1|a|U|276
8VOP|1|a|G|277
8VOP|1|a|A|278
8VOP|1|a|A|279
8VOP|1|a|U|280
8VOP|1|a|C|281
*
8VOP|1|a|G|359
8VOP|1|a|U|360
8VOP|1|a|G|361
8VOP|1|a|A|362
8VOP|1|a|G|363

Current chains

Chain a

23S rRNA

Nearby chains