IL_8VOP_134

3D structure

PDB id

8VOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex (TTC-B) containing mRNA with a 36 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

UG*UAAA

Length

6 nucleotides

Bulged bases

8VOP|1|a|A|1899, 8VOP|1|a|A|1900

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VOP_134 not in the Motif Atlas

Geometric match to IL_4V9F_067

Geometric discrepancy: 0.0843

The information below is about IL_4V9F_067

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_71421.1

Basepair signature

cWW-cWW

Number of instances in this motif group

27

Unit IDs

8VOP|1|a|U|1841
8VOP|1|a|G|1842
*
8VOP|1|a|U|1898
8VOP|1|a|A|1899
8VOP|1|a|A|1900
8VOP|1|a|A|1901

Current chains

Chain a

23S rRNA

Nearby chains

Chain h

50S ribosomal protein L2