IL_8VOP_137

3D structure

PDB id

8VOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex (TTC-B) containing mRNA with a 36 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

UUAG*CGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VOP_137 not in the Motif Atlas

Geometric match to IL_5J7L_317

Geometric discrepancy: 0.1035

The information below is about IL_5J7L_317

Detailed Annotation

UAA/GAN related

Broad Annotation

No text annotation

Motif group

IL_77691.5

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

8VOP|1|a|U|1864
8VOP|1|a|U|1865
8VOP|1|a|A|1866
8VOP|1|a|G|1867
*
8VOP|1|a|C|1874
8VOP|1|a|G|1875
8VOP|1|a|A|1876
8VOP|1|a|A|1877
8VOP|1|a|G|1878

Current chains

Chain a

23S rRNA

Nearby chains