IL_8VOP_146

3D structure

PDB id

8VOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex (TTC-B) containing mRNA with a 36 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

GUGUAGGAUAGG*CCC

Length

15 nucleotides

Bulged bases

8VOP|1|a|U|2111, 8VOP|1|a|A|2114, 8VOP|1|a|G|2115, 8VOP|1|a|U|2118, 8VOP|1|a|A|2119

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VOP|1|a|G|2110
8VOP|1|a|U|2111
8VOP|1|a|G|2112
8VOP|1|a|U|2113
8VOP|1|a|A|2114
8VOP|1|a|G|2115
8VOP|1|a|G|2116
8VOP|1|a|A|2117
8VOP|1|a|U|2118
8VOP|1|a|A|2119
8VOP|1|a|G|2120
8VOP|1|a|G|2121
*
8VOP|1|a|C|2177
8VOP|1|a|C|2178
8VOP|1|a|C|2179

Current chains

Chain a

23S rRNA

Nearby chains

Chain A

Transfer RNA; tRNA