IL_8VOP_147

3D structure

PDB id

8VOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex (TTC-B) containing mRNA with a 36 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

GGGAG*CGACCUUGAAAUACC

Length

20 nucleotides

Bulged bases

8VOP|1|a|U|2172

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VOP|1|a|G|2123
8VOP|1|a|G|2124
8VOP|1|a|G|2125
8VOP|1|a|A|2126
8VOP|1|a|G|2127
*
8VOP|1|a|C|2161
8VOP|1|a|G|2162
8VOP|1|a|A|2163
8VOP|1|a|C|2164
8VOP|1|a|C|2165
8VOP|1|a|U|2166
8VOP|1|a|U|2167
8VOP|1|a|G|2168
8VOP|1|a|A|2169
8VOP|1|a|A|2170
8VOP|1|a|A|2171
8VOP|1|a|U|2172
8VOP|1|a|A|2173
8VOP|1|a|C|2174
8VOP|1|a|C|2175

Current chains

Chain a

23S rRNA

Nearby chains

Chain A

Transfer RNA; tRNA