IL_8VOQ_100

3D structure

PDB id

8VOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

9.3 Å

Loop

Sequence

CCCAGACAG*UCGAG

Length

14 nucleotides

Bulged bases

8VOQ|1|a|A|1046

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VOQ_100 not in the Motif Atlas

Geometric match to IL_4V9F_042

Geometric discrepancy: 0.1494

The information below is about IL_4V9F_042

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_99692.3

Basepair signature

cWW-tSS-tSH-L-R-R-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

8VOQ|1|a|C|1043
8VOQ|1|a|C|1044
8VOQ|1|a|C|1045
8VOQ|1|a|A|1046
8VOQ|1|a|G|1047
8VOQ|1|a|A|1048
8VOQ|1|a|C|1049
8VOQ|1|a|A|1050
8VOQ|1|a|G|1051
*
8VOQ|1|a|U|1108
8VOQ|1|a|C|1109
8VOQ|1|a|G|1110
8VOQ|1|a|A|1111
8VOQ|1|a|G|1112

Current chains

Chain a

23S rRNA

Nearby chains

Chain 9

50S ribosomal protein L10

Chain p

50S ribosomal protein L6

Chain q

50S ribosomal protein L36