IL_8VOQ_126

3D structure

PDB id

8VOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

9.3 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VOQ_126 not in the Motif Atlas

Geometric match to IL_5J7L_386

Geometric discrepancy: 0.0457

The information below is about IL_5J7L_386

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

8VOQ|1|a|G|1666
8VOQ|1|a|G|1667
8VOQ|1|a|A|1668
8VOQ|1|a|A|1669
8VOQ|1|a|C|1670
8VOQ|1|a|U|1671
8VOQ|1|a|A|1672
8VOQ|1|a|G|1673
8VOQ|1|a|G|1674
*
8VOQ|1|a|C|1990
8VOQ|1|a|U|1991
8VOQ|1|a|G|1992
8VOQ|1|a|U|1993
8VOQ|1|a|C|1994

Current chains

Chain a

23S rRNA

Nearby chains

Chain j

50S ribosomal protein L3

Chain t

50S ribosomal protein L14