IL_8VOQ_136

3D structure

PDB id

8VOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

9.3 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VOQ_136 not in the Motif Atlas

Geometric match to IL_5J7L_387

Geometric discrepancy: 0.0595

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8VOQ|1|a|U|1851
8VOQ|1|a|U|1852
8VOQ|1|a|A|1853
8VOQ|1|a|A|1854
8VOQ|1|a|U|1855
8VOQ|1|a|U|1856
8VOQ|1|a|G|1857
8VOQ|1|a|A|1858
8VOQ|1|a|U|1859
8VOQ|1|a|G|1860
*
8VOQ|1|a|U|1882
8VOQ|1|a|U|1883
8VOQ|1|a|G|1884
8VOQ|1|a|A|1885
8VOQ|1|a|U|1886
8VOQ|1|a|C|1887
8VOQ|1|a|G|1888
8VOQ|1|a|A|1889
8VOQ|1|a|A|1890
8VOQ|1|a|G|1891

Current chains

Chain a

23S rRNA

Nearby chains

Chain A

Transfer RNA; tRNA