IL_8VOR_041

3D structure

PDB id

8VOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 51 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAAG*UGUGCCUUCGGGAAC

Length

19 nucleotides

Bulged bases

8VOR|1|D|U|1030, 8VOR|1|D|C|1031, 8VOR|1|D|G|1032

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VOR|1|D|G|1003
8VOR|1|D|A|1004
8VOR|1|D|A|1005
8VOR|1|D|G|1006
*
8VOR|1|D|U|1023
8VOR|1|D|G|1024
8VOR|1|D|U|1025
8VOR|1|D|G|1026
8VOR|1|D|C|1027
8VOR|1|D|C|1028
8VOR|1|D|U|1029
8VOR|1|D|U|1030
8VOR|1|D|C|1031
8VOR|1|D|G|1032
8VOR|1|D|G|1033
8VOR|1|D|G|1034
8VOR|1|D|A|1035
8VOR|1|D|A|1036
8VOR|1|D|C|1037

Current chains

Chain D

16S rRNA

Nearby chains

Chain S

30S ribosomal protein S14