IL_8VOR_051

3D structure

PDB id

8VOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 51 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAAGCGACC*GCAAGCGGACC

Length

20 nucleotides

Bulged bases

8VOR|1|D|A|1257, 8VOR|1|D|A|1280, 8VOR|1|D|C|1281

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VOR|1|D|G|1255
8VOR|1|D|A|1256
8VOR|1|D|A|1257
8VOR|1|D|G|1258
8VOR|1|D|C|1259
8VOR|1|D|G|1260
8VOR|1|D|A|1261
8VOR|1|D|C|1262
8VOR|1|D|C|1263
*
8VOR|1|D|G|1272
8VOR|1|D|C|1273
8VOR|1|D|A|1274
8VOR|1|D|A|1275
8VOR|1|D|G|1276
8VOR|1|D|C|1277
8VOR|1|D|G|1278
8VOR|1|D|G|1279
8VOR|1|D|A|1280
8VOR|1|D|C|1281
8VOR|1|D|C|1282

Current chains

Chain D

16S rRNA

Nearby chains

Chain AB

Transcription termination/antitermination protein NusG

Chain I

30S ribosomal protein S3

Chain P

30S ribosomal protein S10

Chain S

30S ribosomal protein S14

Chain W

30S ribosomal protein S19