3D structure

PDB id
8VOR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 51 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site
Experimental method
ELECTRON MICROSCOPY
Resolution
3.6 Å

Loop

Sequence
CAG*CGAUG
Length
8 nucleotides
Bulged bases
None detected
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8VOR_066 not in the Motif Atlas
Geometric match to IL_5J7L_252
Geometric discrepancy: 0.1614
The information below is about IL_5J7L_252
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_47972.1
Basepair signature
cWW-L-R-L-cWW-L
Number of instances in this motif group
1

Unit IDs

8VOR|1|a|C|269
8VOR|1|a|A|270
8VOR|1|a|G|271
*
8VOR|1|a|C|366
8VOR|1|a|G|367
8VOR|1|a|A|368
8VOR|1|a|U|369
8VOR|1|a|G|370

Current chains

Chain a
23S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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