3D structure

PDB id
8VOR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 51 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site
Experimental method
ELECTRON MICROSCOPY
Resolution
3.6 Å

Loop

Sequence
CCUGAAUC*GUGAG
Length
13 nucleotides
Bulged bases
8VOR|1|a|G|277
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8VOR_067 not in the Motif Atlas
Geometric match to IL_5J7L_253
Geometric discrepancy: 0.1673
The information below is about IL_5J7L_253
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_77870.1
Basepair signature
cWW-L-R-L-tHS-L-cWW-L-cWW
Number of instances in this motif group
2

Unit IDs

8VOR|1|a|C|274
8VOR|1|a|C|275
8VOR|1|a|U|276
8VOR|1|a|G|277
8VOR|1|a|A|278
8VOR|1|a|A|279
8VOR|1|a|U|280
8VOR|1|a|C|281
*
8VOR|1|a|G|359
8VOR|1|a|U|360
8VOR|1|a|G|361
8VOR|1|a|A|362
8VOR|1|a|G|363

Current chains

Chain a
23S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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