IL_8VOR_102

3D structure

PDB id

8VOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 51 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAAA*UC

Length

6 nucleotides

Bulged bases

8VOR|1|a|A|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VOR_102 not in the Motif Atlas

Geometric match to IL_5J7L_385

Geometric discrepancy: 0.1854

The information below is about IL_5J7L_385

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.6

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

41

Unit IDs

8VOR|1|a|G|1087
8VOR|1|a|A|1088
8VOR|1|a|A|1089
8VOR|1|a|A|1090
*
8VOR|1|a|U|1101
8VOR|1|a|C|1102

Current chains

Chain a

23S rRNA

Nearby chains

Chain Y

50S ribosomal protein L11

Chain q

50S ribosomal protein L36