IL_8VOR_129

3D structure

PDB id

8VOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 51 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

8VOR|1|a|U|1714

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VOR_129 not in the Motif Atlas

Geometric match to IL_5J7L_309

Geometric discrepancy: 0.1164

The information below is about IL_5J7L_309

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8VOR|1|a|U|1712
8VOR|1|a|A|1713
8VOR|1|a|U|1714
8VOR|1|a|G|1715
8VOR|1|a|U|1716
8VOR|1|a|A|1717
8VOR|1|a|G|1718
*
8VOR|1|a|U|1742
8VOR|1|a|G|1743
8VOR|1|a|A|1744
8VOR|1|a|A|1745
8VOR|1|a|A|1746

Current chains

Chain a

23S rRNA

Nearby chains