IL_8VOR_153

3D structure

PDB id

8VOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 51 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VOR_153 not in the Motif Atlas

Geometric match to IL_5J7L_338

Geometric discrepancy: 0.0911

The information below is about IL_5J7L_338

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

8VOR|1|a|C|2466
8VOR|1|a|C|2467
8VOR|1|a|A|2468
8VOR|1|a|A|2469
8VOR|1|a|G|2470
*
8VOR|1|a|C|2480
8VOR|1|a|G|2481
8VOR|1|a|A|2482
8VOR|1|a|C|2483
8VOR|1|a|G|2484

Current chains

Chain a

23S rRNA

Nearby chains

Chain q

50S ribosomal protein L36

Chain v

50S ribosomal protein L16