3D structure

PDB id
8VOS (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 60 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site
Experimental method
ELECTRON MICROSCOPY
Resolution
4.6 Å

Loop

Sequence
GUUG*CAUC
Length
8 nucleotides
Bulged bases
8VOS|1|a|U|1061
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8VOS_101 not in the Motif Atlas
Geometric match to IL_5J7L_285
Geometric discrepancy: 0.2561
The information below is about IL_5J7L_285
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_92446.2
Basepair signature
cWW-cWW-R-L-L
Number of instances in this motif group
5

Unit IDs

8VOS|1|a|G|1059
8VOS|1|a|U|1060
8VOS|1|a|U|1061
8VOS|1|a|G|1062
*
8VOS|1|a|C|1076
8VOS|1|a|A|1077
8VOS|1|a|U|1078
8VOS|1|a|C|1079

Current chains

Chain a
23S rRNA

Nearby chains

Chain Y
50S ribosomal protein L11

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.0597 s