IL_8VOS_136

3D structure

PDB id

8VOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 60 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VOS_136 not in the Motif Atlas

Geometric match to IL_5J7L_387

Geometric discrepancy: 0.0595

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8VOS|1|a|U|1851
8VOS|1|a|U|1852
8VOS|1|a|A|1853
8VOS|1|a|A|1854
8VOS|1|a|U|1855
8VOS|1|a|U|1856
8VOS|1|a|G|1857
8VOS|1|a|A|1858
8VOS|1|a|U|1859
8VOS|1|a|G|1860
*
8VOS|1|a|U|1882
8VOS|1|a|U|1883
8VOS|1|a|G|1884
8VOS|1|a|A|1885
8VOS|1|a|U|1886
8VOS|1|a|C|1887
8VOS|1|a|G|1888
8VOS|1|a|A|1889
8VOS|1|a|A|1890
8VOS|1|a|G|1891

Current chains

Chain a

23S rRNA

Nearby chains

Chain A

Transfer RNA; tRNA