IL_8VOS_163

3D structure

PDB id

8VOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 60 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GAUAAG*CGAAAC

Length

12 nucleotides

Bulged bases

8VOS|1|a|A|2765

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VOS_163 not in the Motif Atlas

Geometric match to IL_5J7L_350

Geometric discrepancy: 0.0671

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

8VOS|1|a|G|2737
8VOS|1|a|A|2738
8VOS|1|a|U|2739
8VOS|1|a|A|2740
8VOS|1|a|A|2741
8VOS|1|a|G|2742
*
8VOS|1|a|C|2762
8VOS|1|a|G|2763
8VOS|1|a|A|2764
8VOS|1|a|A|2765
8VOS|1|a|A|2766
8VOS|1|a|C|2767

Current chains

Chain a

23S rRNA

Nearby chains

Chain p

Large ribosomal subunit protein uL6

Chain q

50S ribosomal protein L36

Chain s

Large ribosomal subunit protein uL13