IL_8VPK_007
3D structure
- PDB id
- 8VPK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-B-Ery
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- UGAGUAG*CGAAAG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VPK_007 not in the Motif Atlas
- Homologous match to IL_9DFE_007
- Geometric discrepancy: 0.1086
- The information below is about IL_9DFE_007
- Detailed Annotation
- 7x6 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_26307.2
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 9
Unit IDs
8VPK|1|A|U|239
8VPK|1|A|G|240
8VPK|1|A|A|241
8VPK|1|A|G|242
8VPK|1|A|U|243
8VPK|1|A|A|244
8VPK|1|A|G|245
*
8VPK|1|A|C|253
8VPK|1|A|G|254
8VPK|1|A|A|255
8VPK|1|A|A|256
8VPK|1|A|A|257
8VPK|1|A|G|258
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain M
- 50S ribosomal protein L15
- Chain e
- 50S ribosomal protein L35
Coloring options: