IL_8VPK_030
3D structure
- PDB id
- 8VPK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-B-Ery
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- GAGGUAG*CGAAUGC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VPK_030 not in the Motif Atlas
- Homologous match to IL_5J7L_270
- Geometric discrepancy: 0.0942
- The information below is about IL_5J7L_270
- Detailed Annotation
- 7x7 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_29198.2
- Basepair signature
- cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
8VPK|1|A|G|971
8VPK|1|A|A|972
8VPK|1|A|G|973
8VPK|1|A|G|974
8VPK|1|A|U|975
8VPK|1|A|A|976
8VPK|1|A|G|977
*
8VPK|1|A|C|1030
8VPK|1|A|G|1031
8VPK|1|A|A|1032
8VPK|1|A|A|1033
8VPK|1|A|U|1034
8VPK|1|A|G|1035
8VPK|1|A|C|1036
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 2
- 50S ribosomal protein L30
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain N
- Large ribosomal subunit protein uL16
- Chain W
- 50S ribosomal protein L25
- Chain X
- 50S ribosomal protein L27
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