IL_8VPK_039
3D structure
- PDB id
- 8VPK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-B-Ery
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- CCCCUAAG*CG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VPK_039 not in the Motif Atlas
- Homologous match to IL_9DFE_036
- Geometric discrepancy: 0.131
- The information below is about IL_9DFE_036
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_41203.4
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 11
Unit IDs
8VPK|1|A|C|1122
8VPK|1|A|C|1123
8VPK|1|A|C|1124
8VPK|1|A|C|1125
8VPK|1|A|U|1126
8VPK|1|A|A|1127
8VPK|1|A|A|1128
8VPK|1|A|G|1129
*
8VPK|1|A|C|1269
8VPK|1|A|G|1270
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 3
- 50S Ribosomal Protein L37
- Chain K
- 50S Ribosomal Protein L13
- Chain R
- 50S Ribosomal Protein L20
Coloring options: