IL_8VPK_048

3D structure

PDB id

8VPK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-B-Ery

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

CGGUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

8VPK|1|A|U|1325

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VPK_048 not in the Motif Atlas

Homologous match to IL_5J7L_288

Geometric discrepancy: 0.1399

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

8VPK|1|A|C|1322
8VPK|1|A|G|1323
8VPK|1|A|G|1324
8VPK|1|A|U|1325
8VPK|1|A|G|1326
8VPK|1|A|A|1327
8VPK|1|A|A|1328
8VPK|1|A|G|1329
*
8VPK|1|A|U|1349
8VPK|1|A|G|1350
8VPK|1|A|G|1351
8VPK|1|A|A|1352
8VPK|1|A|G|1353

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain R

50S Ribosomal Protein L20